Help

Input – Sequences

Paste your amino acide sequences in FASTA format such as:

>TEST0
O=C1Cc2cc(CCN3CCN(c4nsc5ccccc45)CC3)c(Cl)cc2N1
>TEST1
CN(C)CCOC1=Cc2ccccc2Sc2ccc(Cl)cc21

where AC_1 and AC_2 are sequence IDs. Each sequence should be at least 5 a.a. long and maximally 250 a.a. or an error will be reported. Only 1-letter code for 20 standard amino acids is acceptable. If the number of sequences is large, you can upload them in a file (in FASTA format) by selecting the “Upload FASTA sequences” checkbox. Uploaded sequence files are limited to 1 MB.

Input – Prediction for Types of Cancer

Select the prediction for types of cancer that you are interested to predict:

  • NR-AR
  • NR-AhR
  • NR-ER
  • NR-PPAR-gamma
  • SR-ATAD5
  • SR-MMP
  • NR-AR-LBD
  • NR-Aromatase
  • NR-ER-LBD
  • SR-ARE
  • SR-HSE
  • SR-p53

Input – Job Description (Optional)

A short description can be supplied together with a job submission. The description will be displayed in your job list.

Input – Create Account (Necessary)

If you provide an email to your submitted job, you can easily retrieve all your past job results by giving your email. Note that we will not send you any emails about your job run.

Input – Submit

Click the submit button when ready. A job ID will be given to your submitted job; a status page will be displayed with automatically refreshing function to check for the running status of your job. As soon as the run is finished, the result will be displayed in the same window. Please bookmark the status page before leaving the window, so that you can check back the result later. Or if you have provided an email during job submission, you can enter your email at the Input page to login and retrieve all your past job results.

Result

The prediction result of all submitted sequences will be displayed in a single page. All columns can be sorted as user’s need, and all results are downloadable in a CSV file.

Contact

If you have further questions, please contact:

Developer:

  • Jiarui Chen chen709847237@gmail.com
  • Carter Cheong  Carter96121@gmail.com
  • Edison Un (web developer) chonwaiun@gmail.com

PI:

  • Shirley W. I. Siu siuwengin@gmail.com